{
"title": "Cosine",
"type": "object",
"properties": {
"marco": {
"anyOf": [
{
"$ref": "#/$defs/Marco"
},
{
"type": "null"
}
]
},
"core": {
"anyOf": [
{
"$ref": "#/$defs/Core"
},
{
"type": "null"
}
]
},
"misc": {
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},
{
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}
]
}
},
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"properties": {
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
2.0,
2.5
],
"description": "Maximum growth rates for two phytoplankton types",
"title": "Gmaxs"
},
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.2,
0.075
],
"description": "Mortality rates for two phytoplankton types",
"title": "Gammas"
},
"pis": {
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"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
1.5,
1.5
],
"description": "Ammonium inhibition parameters for two phytoplankton types",
"title": "Pis"
},
"kno3s": {
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"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
1.0,
3.0
],
"description": "NO3 half-saturation constants for two phytoplankton types",
"title": "Kno3S"
},
"knh4s": {
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"type": "array"
},
{
"type": "null"
}
],
"default": [
0.15,
0.45
],
"description": "NH4 half-saturation constants for two phytoplankton types",
"title": "Knh4S"
},
"kpo4s": {
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"items": {},
"type": "array"
},
{
"type": "null"
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],
"default": [
0.1,
0.1
],
"description": "PO4 half-saturation constants for two phytoplankton types",
"title": "Kpo4S"
},
"kco2s": {
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"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
50.0,
50.0
],
"description": "CO2 half-saturation constants for two phytoplankton types",
"title": "Kco2S"
},
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},
{
"type": "null"
}
],
"default": 4.5,
"description": "SiO4 half-saturation constant for diatoms",
"title": "Ksio4"
},
"kns": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.0,
0.0
],
"description": "Nighttime uptake rates of NH4 for two phytoplankton types",
"title": "Kns"
},
"alphas": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.1,
0.1
],
"description": "Initial slopes of P-I curve for two phytoplankton types",
"title": "Alphas"
},
"betas": {
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.0,
0.0
],
"description": "Slopes for photo-inhibition for two phytoplankton types",
"title": "Betas"
},
"aks": {
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.75,
0.03,
0.066
],
"description": "Light extinction coefficients for phytoplankton and suspended particulate matter",
"title": "Aks"
},
"betaz": {
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
1.35,
0.4
],
"description": "Maximum grazing rates for two zooplankton types",
"title": "Betaz"
},
"alphaz": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.75,
0.75
],
"description": "Assimilation rates for two zooplankton types",
"title": "Alphaz"
},
"gammaz": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.2,
0.2
],
"description": "Mortality rates for two zooplankton types",
"title": "Gammaz"
},
"kez": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.2,
0.2
],
"description": "Excretion rates for two zooplankton types",
"title": "Kez"
},
"kgz": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.5,
0.25
],
"description": "Reference prey concentrations for grazing for two zooplankton types",
"title": "Kgz"
},
"rhoz": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.6,
0.3,
0.1
],
"description": "Prey preference factors of Z2 on (S2, Z1, DN)",
"title": "Rhoz"
},
"ipo4": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 1,
"description": "Flag to add additional PO4 from biogenic silica dissolution",
"title": "Ipo4"
},
"tr": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 20.0,
"description": "Reference temperature for temperature adjustment for CoSiNE sink and source",
"title": "Tr"
},
"kox": {
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 30.0,
"description": "Reference oxygen concentration for oxidation",
"title": "Kox"
},
"wss2": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.2,
"description": "Settling velocity of S2 (phytoplankton type 2)",
"title": "Wss2"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 1.0,
"description": "Settling velocity of DN (detrital nitrogen)",
"title": "Wsdn"
},
"wsdsi": {
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 1.0,
"description": "Settling velocity of DSi (dissolved silica)",
"title": "Wsdsi"
},
"si2n": {
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 1.2,
"description": "Silica to nitrogen conversion coefficient",
"title": "Si2N"
},
"p2n": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.0625,
"description": "Phosphorus to nitrogen conversion coefficient",
"title": "P2N"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 8.625,
"description": "Oxygen to nitrogen (NO3) conversion coefficient",
"title": "O2No"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 6.625,
"description": "Oxygen to nitrogen (NH4) conversion coefficient",
"title": "O2Nh"
},
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"type": "number"
},
{
"type": "null"
}
],
"default": 7.3,
"description": "Carbon to nitrogen conversion coefficient",
"title": "C2N"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.07,
"description": "Nitrification coefficient",
"title": "Gamman"
},
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"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 391.63,
"description": "Atmospheric CO2 concentration",
"title": "Pco2A"
},
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.009,
0.075
],
"description": "Remineralization coefficients for DN (detrital nitrogen)",
"title": "Kmdn"
},
"kmdsi": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.0114,
0.015
],
"description": "Remineralization coefficients for DSi (dissolved silica)",
"title": "Kmdsi"
}
},
"title": "Core",
"type": "object"
},
"Marco": {
"additionalProperties": false,
"properties": {
"idelay": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Switch for 7-day delay in zooplankton predation (0: off, 1: on)",
"title": "Idelay"
},
"ndelay": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 7,
"description": "Number of days for zooplankton predation delay when idelay is active",
"title": "Ndelay"
},
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"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Switch for bottom grazing function (0: off, 1: on)",
"title": "Ibgraze"
},
"idapt": {
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{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Switch for light adaptation (0: off, 1: on)",
"title": "Idapt"
},
"alpha_corr": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 1.25,
"description": "Correction factor for light adaptation when idapt is active",
"title": "Alpha Corr"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 10.0,
"description": "Euphotic zone depth parameter for light adaptation when idapt is active",
"title": "Zeptic"
},
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{
"type": "integer"
},
{
"type": "null"
}
],
"default": 1,
"description": "Switch for Z2 grazing on S2, Z1, and DN (0: off, 1: on)",
"title": "Iz2Graze"
},
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"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "CoSiNE model station output option (0: off, 1-5: various output levels)",
"title": "Iout Cosine"
},
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{
"type": "integer"
},
{
"type": "null"
}
],
"default": 30,
"description": "Output interval (number of time steps) for CoSiNE model station output",
"title": "Nspool Cosine"
},
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{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Switch for CO2 limitation on phytoplankton growth (0: off, 1: on)",
"title": "Ico2S"
},
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"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Suspended Particulate Matter (SPM) calculation method (0: constant, 1: spatial varying, 2: SED model)",
"title": "Ispm"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 20.0,
"description": "Constant SPM value used when ispm is 0",
"title": "Spm0"
},
"ised": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 1,
"description": "Switch for sediment flux model (0: off, 1: on)",
"title": "Ised"
}
},
"title": "Marco",
"type": "object"
},
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"properties": {
"iws": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Flag to enable or disable diatom sinking velocity dependence on NO3 concentration",
"title": "Iws"
},
"no3c": {
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 2.0,
"description": "Critical NO3 concentration (mmol/m3) for diatom sinking velocity calculation",
"title": "No3C"
},
"ws1": {
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 2.5,
"description": "Diatom sinking velocity (m/day) when NO3 concentration is below no3c",
"title": "Ws1"
},
"ws2": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 2.0,
"description": "Diatom sinking velocity (m/day) when NO3 concentration is above no3c",
"title": "Ws2"
},
"iclam": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 0,
"description": "Flag to enable or disable clam grazing model",
"title": "Iclam"
},
"deltaz": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 1,
"description": "Vertical grid size (meter) for clam grazing model",
"title": "Deltaz"
},
"kcex": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.002,
"description": "Clam excretion rate (day^-1)",
"title": "Kcex"
},
"nperclam": {
"anyOf": [
{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.39032,
"description": "Nitrogen content per clam (mmol[N])",
"title": "Nperclam"
},
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{
"type": "number"
},
{
"type": "null"
}
],
"default": 0.00545,
"description": "Clam weight (g)",
"title": "Wclam"
},
"fclam": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 40,
"description": "Clam filtration rate (L.g[AFDW]^-1.day^-1)",
"title": "Fclam"
},
"nclam0": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": 2000,
"description": "Initial number of clams",
"title": "Nclam0"
},
"fs2": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.1,
0.1,
0.8
],
"description": "Partitioning coefficients for S2 from water column into sediment (3 values)",
"title": "Fs2"
},
"rks2": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.004,
0.0001,
0.0
],
"description": "Changing rates of remineralization for sediment S2 (3 values, day^-1)",
"title": "Rks2"
},
"mks2": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.1,
0.01,
0.0
],
"description": "Maximum remineralization rates for sediment S2 (3 values, day^-1)",
"title": "Mks2"
},
"fdn": {
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{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.15,
0.1,
0.75
],
"description": "Partitioning coefficients for DN from water column into sediment (3 values)",
"title": "Fdn"
},
"rkdn": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.004,
0.0001,
0.0
],
"description": "Changing rates of remineralization for sediment DN (3 values, day^-1)",
"title": "Rkdn"
},
"mkdn": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.1,
0.01,
0.0
],
"description": "Maximum remineralization rates for sediment DN (3 values, day^-1)",
"title": "Mkdn"
},
"fdsi": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.3,
0.3,
0.4
],
"description": "Partitioning coefficients for DSi from water column into sediment (3 values)",
"title": "Fdsi"
},
"rkdsi": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.004,
0.0001,
0.0
],
"description": "Changing rates of remineralization for sediment DSi (3 values, day^-1)",
"title": "Rkdsi"
},
"mkdsi": {
"anyOf": [
{
"items": {},
"type": "array"
},
{
"type": "null"
}
],
"default": [
0.1,
0.01,
0.0
],
"description": "Maximum remineralization rates for sediment DSi (3 values, day^-1)",
"title": "Mkdsi"
}
},
"title": "Misc",
"type": "object"
}
},
"additionalProperties": false
}